TyCHE

Contents:

  • About TyCHE
  • Build TyCHE Trees Using Dowser
  • API Reference
    • tyche
      • evolution
        • tree
        • likelihood
        • branchratemodel
        • operator
        • substitutionmodel
      • inference
TyCHE
  • API Reference
  • tyche
  • evolution
  • operator
  • View page source

operator

  • SubtreeTypeSwitchOperator
    • SubtreeTypeSwitchOperator
      • setTraverseMode
      • setTypeSwitchMode
      • setGenerationsLimit
      • getGenerationsForProposal
  • LeafConsciousTypeTreeOperator
    • LeafConsciousTypeTreeOperator
      • nodeTypesInput
      • traitNameInput
      • nodeTypes
      • lowerInt
      • upperInt
      • germlineNum
      • traitName
      • isAmbiguous
      • isGermlineRoot
      • LeafConsciousTypeTreeOperator
      • LeafConsciousTypeTreeOperator
      • getAmbiguousTips
      • initAndValidate
      • proposal
  • GRTBactrianScaleOperator
    • GRTBactrianScaleOperator
      • doGRTProposal
      • proposal
  • MultiNodeTypeSwitchOperator
    • MultiNodeTypeSwitchOperator
      • numberOfTypes
      • mode
      • typeSwitchMode
      • generationLimit
      • homogenousValue
      • currentOriginTypes
      • isHomogenous
      • currentProposalType
      • MultiNodeTypeSwitchOperator
      • MultiNodeTypeSwitchOperator
      • initAndValidate
      • proposal
      • setTraverseMode
      • setTypeSwitchMode
      • setGenerationsLimit
      • getGenerationsForProposal
      • setNodes
      • getHastingsRatio
      • getProposalDistribution
      • getRelatedNodeTypeProposalValue
      • updateIsHomogenous
      • setRelatedNodeType
      • setSubtree
      • setUptree
  • GRTCompatibleOperator
    • GRTCompatibleOperator
    • possible
      • doGRTProposal
  • GRTExchange
    • GRTExchange
      • doGRTProposal
      • proposal
  • GRTSubtreeSlide
    • GRTSubtreeSlide
      • isGermline
      • doGRTProposal
      • proposal
      • getDelta
      • intersectingEdges
  • GRTScaleOperator
    • GRTScaleOperator
      • doGRTProposal
      • proposal
  • GRTWilsonBalding
    • GRTWilsonBalding
      • doGRTProposal
      • proposal
  • CombinedRootOperator
    • CombinedRootOperator
      • CombinedRootOperator
      • CombinedRootOperator
      • initAndValidate
      • getNewHeight
      • getRandomType
      • adjustRoot
      • proposal
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