GRTSubtreeSlide
- public class tyche.evolution.operator.GRTSubtreeSlide extends beast.base.evolution.operator.SubtreeSlide
SubtreeSlide Operator that will appropriately handle if the provided Tree is a GermlineRootTree
- protected boolean isGermline(Node node)
- public double doGRTProposal()
Do a probabilistic subtree slide move.
- Returns:
log of Hastings Ratio, or Double.NEGATIVE_INFINITY if proposal should not be accepted *
- public double proposal()
Do a probabilistic subtree slide move.
- Returns:
log of Hastings Ratio, or Double.NEGATIVE_INFINITY if proposal should not be accepted *
- private double getDelta()
- private int intersectingEdges(Node node, double height, List directChildren)