TyCHE

Contents:

  • About TyCHE
  • Build TyCHE Trees Using Dowser
  • API Reference
    • tyche
      • evolution
        • tree
        • likelihood
        • branchratemodel
        • operator
        • substitutionmodel
      • inference
TyCHE
  • API Reference
  • tyche
  • evolution
  • branchratemodel
  • View page source

branchratemodel

  • TycheExpectedOccupancyClockModel
    • TycheExpectedOccupancyClockModel
      • isExpectedOccupancy
      • getBranchRate
  • AbstractTycheTypeLinkedClockModel
    • AbstractTycheTypeLinkedClockModel
      • typeLinkedRatesInput
      • nodeTypesInput
      • typeSwitchClockRateInput
      • svsInput
      • branchRatesInput
      • occupanciesInput
      • typeSwitchClockRate
      • svs
      • qMatrix
      • typeLinkedRates
      • branchRates
      • occupancies
      • nodeTypes
      • muParameter
      • initAndValidate
      • getTypeLinkedRate
      • getOccupancy
      • getBranchRate
      • getRateForBranch
      • isExpectedOccupancy
      • requiresRecalculation
  • TycheMixedSwitchClockModel
    • TycheMixedSwitchClockModel
      • isExpectedOccupancy
      • getBranchRate
  • TycheInstantSwitchClockModel
    • TycheInstantSwitchClockModel
      • getBranchRate
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