TyCHE

Contents:

  • About TyCHE
  • Build TyCHE Trees Using Dowser
  • API Reference
    • tyche
      • evolution
        • tree
        • likelihood
        • branchratemodel
        • operator
        • substitutionmodel
      • inference
TyCHE
  • API Reference
  • tyche
  • evolution
  • likelihood
  • View page source

likelihood

  • AncestralTypeLikelihood
    • AncestralTypeLikelihood
      • STATES_KEY
      • tagInput
      • useJava
      • nodeTypesInput
      • nodeTypes
      • qMatrix
      • patternCount
      • stateCount
      • tipStates
      • treeTraits
      • dataType
      • tag
      • jointLogLikelihood
      • storedJointLogLikelihood
      • initAndValidate
      • requiresRecalculation
      • calculateLogP
      • traverseTypeTree
      • store
      • restore
      • getTransitionMatrix
      • getDataType
      • getStatesForNode
      • getTreeTraits
      • getTreeTrait
      • getFormattedState
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