MetadataTree

public class tyche.evolution.tree.MetadataTree extends beast.base.evolution.tree.Tree

A Tree that can store extra metadata for its tips.

Map tipMetaData

HashMap of metadata hash maps

i.e. tipMetaData.get(“traitName”) will return a hashmap that maps each tip to its traitName value.

protected void processTraits(List traitList)

Process trait sets.

Parameters:

traitList – List of trait sets.

public Object getTipMetaData(String pattern, String tipID)

Get the metadata value associated with a tip by its trait name

Parameters:

• pattern – a String representing the name of the trait

• tipID – a String representing the taxon/ID of the tip to get metadata for

Returns:

Object representing the metadata value of trait name ‘pattern’ associated with tip ‘tipID’

public Set getTipMetaDataNames()

Get the names of the metadata traits associated with this tree.

Returns:

Set of Strings containing all the metadata/trait names associated with this tree.